| Crate (litter) |
1841 |
sitABCD |
unknown[sitABCD_1_AY598030] |
ColpVC, IncFIA, IncFIB(AP001918) |
| Crate (dirty) |
6448 |
aadA5, aph(3'')-Ib, aph(6)-Id, blaCTX-M-55, dfrA17, floR, gyrA (D87N), gyrA (S83L), parC (S80I), tet(A) |
streptomycin, kanamycin, ampicillin, ceftriaxone, trimethoprim, chloramphenicol, ciprofloxacin I/R, nalidixic acid, tetracycline |
p0111 |
| Scalding (water) |
101 |
aadA1, blaTEM-1B, dfrA1, sul2 |
streptomycin, ampicillin, trimethoprim, sulfisoxazole |
IncFIA, IncI1-I(Alpha) |
| Post-defeathering (feathers) |
155 |
blaTEM-1B, dfrA1, gyrA (S83A), sul2, tet(A) |
ampicillin, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline |
ColpVC, IncFIB(pLF82-PhagePlasmid), IncI1-I(Alpha), p0111 |
| Post-defeathering (feathers) |
10 |
blaTEM-1B, dfrA1, gyrA (S83L), sul2, tet(A) |
ampicillin, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline |
ColpVC, ColpVC, IncI1-I(Alpha), p0111 |
| Pre-evisceration rehang (carcass) |
1196 |
blaCTX-M-15, blaTEM-1B, gyrA (D87N), gyrA (S83L), mph(A), parC (S80I), tet(A) |
ampicillin, ceftriaxone, ciprofloxacin I/R, nalidixic acid, erythromycin, azithromycin, tetracycline |
IncFIA, IncI2(Delta), IncR |
| Post-evisceration (viscera) |
6448 |
aadA5, aph(3'')-Ib, aph(6)-Id, blaCTX-M-55, dfrA17, floR, gyrA (D87N), gyrA (S83L), parC (S80I), tet(A) |
streptomycin, kanamycin, ampicillin, ceftriaxone, trimethoprim, chloramphenicol, ciprofloxacin I/R, nalidixic acid, tetracycline |
p0111 |
| Post-evisceration (viscera) |
770 |
blaTEM-1B |
ampicillin |
IncFIB(AP001918), p0111 |
| Neck skin trim (neck skin) |
6448 |
aadA5, aph(3'')-Ib, aph(6)-Id, blaCTX-M-55, dfrA17, floR, gyrA (D87N), gyrA (S83L), parC (S80I), sul2, tet(A) |
streptomycin, kanamycin, ampicillin, ceftriaxone, trimethoprim, chloramphenicol, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline |
p0111 |
| Neck skin trim (neck skin) |
6448 |
aadA5, aph(3'')-Ib, aph(6)-Id, blaCTX-M-55, dfrA17, floR, gyrA (D87N), gyrA (S83L), parC (S80I), tet(A) |
streptomycin, kanamycin, ampicillin, ceftriaxone, trimethoprim, chloramphenicol, ciprofloxacin I/R, nalidixic acid, tetracycline |
p0111 |
| Neck skin trim (neck skin) |
6448 |
aadA5, aph(3'')-Ib, aph(6)-Id, blaCTX-M-55, dfrA17, floR, gyrA (D87N), gyrA (S83L), parC (S80I), tet(A) |
streptomycin, kanamycin, ampicillin, ceftriaxone, trimethoprim, chloramphenicol, ciprofloxacin I/R, nalidixic acid, tetracycline |
p0111 |
| Post-inside-outside wash (carcass) |
48 |
ant(3'')-Ia, aph(3'')-Ib, aph(6)-Id, blaTEM-220, dfrA15, gyrA (D87N), gyrA (S83L), parC (S80I), sul3, tet(A) |
spectinomycin, streptomycin, kanamycin, ampicillin, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline |
IncX1, p0111 |
| Post-inside-outside wash (carcass) |
48 |
ant(3'')-Ia, aph(3'')-Ib, aph(6)-Id, blaTEM-220, dfrA15, gyrA (D87N), gyrA (S83L), parC (S80I), sul3, tet(A) |
spectinomycin, streptomycin, kanamycin, ampicillin, trimethoprim, ciprofloxacin I/R, nalidixic acid, sulfisoxazole, tetracycline |
IncX1, p0111 |
| Post-chill (carcass) |
1201 |
None |
Susceptible |
IncI2(Delta), p0111 |
| At dispatch (carcass) |
2491 |
blaTEM-1B, dfrA1, sul2, tet(A) |
ampicillin, trimethoprim, sulfisoxazole, tetracycline |
IncI1-I(Alpha), p0111 |